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Complex of S52A Substituted Drosophila LUSH protein with Butanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OOH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 25% PEG 400, 100mM Sodium Acetate, 3:1 protein/well ratio, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature Room tempK, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.13 42.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.872 α = 90 b = 46.872 β = 90 c = 111.327 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2003-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 98 0.05 8.2 7.02 15934 15795 2 2 21.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.6 0.194 0.214 2.3 7.1 1088
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OOH 2 29.11 2 2 15795 1592 99.14 0.187 0.169 0.163 0.1654 0.224 0.222 RANDOM 21.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.06 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.407 r_dihedral_angle_3_deg 13.683 r_dihedral_angle_4_deg 12.817 r_dihedral_angle_1_deg 4.451 r_scangle_it 3.767 r_scbond_it 2.667 r_mcangle_it 2.034 r_mcbond_it 1.495 r_angle_refined_deg 1.048 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.407 r_dihedral_angle_3_deg 13.683 r_dihedral_angle_4_deg 12.817 r_dihedral_angle_1_deg 4.451 r_scangle_it 3.767 r_scbond_it 2.667 r_mcangle_it 2.034 r_mcbond_it 1.495 r_angle_refined_deg 1.048 r_nbtor_refined 0.294 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.159 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1986 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction CNS phasing