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Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 20.0% PEG 8000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.9 57.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.275 α = 90 b = 106.275 β = 90 c = 111.68 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97942 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.907 99.1 0.149 0.149 4.4 6.2 47977 40.49
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.46 98.6 0.673 0.673 1 3.8 3478
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 29.907 47974 2420 99.17 0.152 0.149 0.1536 0.206 0.2081 RANDOM 27.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.93 -1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.997 r_dihedral_angle_4_deg 17.772 r_dihedral_angle_3_deg 16.095 r_scangle_it 10.886 r_scbond_it 9.442 r_dihedral_angle_1_deg 6.787 r_mcangle_it 5.852 r_mcbond_it 4.359 r_angle_refined_deg 1.495 r_mcbond_other 1.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.997 r_dihedral_angle_4_deg 17.772 r_dihedral_angle_3_deg 16.095 r_scangle_it 10.886 r_scbond_it 9.442 r_dihedral_angle_1_deg 6.787 r_mcangle_it 5.852 r_mcbond_it 4.359 r_angle_refined_deg 1.495 r_mcbond_other 1.306 r_angle_other_deg 0.93 r_symmetry_hbond_refined 0.294 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.212 r_symmetry_vdw_other 0.208 r_nbd_other 0.205 r_xyhbond_nbd_refined 0.192 r_nbtor_refined 0.184 r_nbtor_other 0.092 r_chiral_restr 0.089 r_metal_ion_refined 0.078 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_xyhbond_nbd_other 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7282 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 149
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing SOLVE phasing