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Crystal structure of the extracellular portion of HAb18G/CD147
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 277 0.5M ammonium sulfate, 0.1M triSodium Citrate dihydrate pH 5.60, 1.0M Lithium Sulfate monohydrate, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.22 70.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.481 α = 90 b = 126.481 β = 90 c = 169.926 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-06-29 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2007-06-29 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.9792 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 50 99.4 0.106 11.7 7.3 34141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.9 100 0.586 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.8 39.6 34141 1731 98.8 0.245 0.243 0.2489 0.294 0.2946 RANDOM 46.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 0.43 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.687 r_dihedral_angle_3_deg 21.055 r_dihedral_angle_4_deg 19.8 r_dihedral_angle_1_deg 6.78 r_scangle_it 1.676 r_angle_refined_deg 1.46 r_scbond_it 1.011 r_mcangle_it 0.667 r_mcbond_it 0.382 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.687 r_dihedral_angle_3_deg 21.055 r_dihedral_angle_4_deg 19.8 r_dihedral_angle_1_deg 6.78 r_scangle_it 1.676 r_angle_refined_deg 1.46 r_scbond_it 1.011 r_mcangle_it 0.667 r_mcbond_it 0.382 r_nbtor_refined 0.308 r_nbd_refined 0.246 r_symmetry_vdw_refined 0.233 r_xyhbond_nbd_refined 0.205 r_symmetry_hbond_refined 0.171 r_chiral_restr 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5527 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing