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Crystal structure of carboxylesterase (NP_108484.1) from Mesorhizobium loti at 1.75 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 277 NANODROP, 2.0M (NH4)2SO4, 0.2M Li2SO4, 0.1M CAPS pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.19 61.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.16 α = 90 b = 105 β = 90 c = 123.62 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-09-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000, 0.9795 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 29.643 97.6 0.051 10.85 62118 -3 28.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 87.8 0.556 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 29.643 62069 3150 98.85 0.165 0.163 0.1679 0.19 0.1944 RANDOM 19.283
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.16 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.334 r_dihedral_angle_4_deg 15.624 r_dihedral_angle_3_deg 12.266 r_scangle_it 6.715 r_dihedral_angle_1_deg 6.011 r_scbond_it 4.496 r_mcangle_it 2.629 r_mcbond_it 1.914 r_angle_refined_deg 1.526 r_angle_other_deg 1.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.334 r_dihedral_angle_4_deg 15.624 r_dihedral_angle_3_deg 12.266 r_scangle_it 6.715 r_dihedral_angle_1_deg 6.011 r_scbond_it 4.496 r_mcangle_it 2.629 r_mcbond_it 1.914 r_angle_refined_deg 1.526 r_angle_other_deg 1.031 r_mcbond_other 0.559 r_nbd_other 0.202 r_nbd_refined 0.201 r_symmetry_vdw_other 0.171 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.159 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.085 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3173 Nucleic Acid Atoms Solvent Atoms 482 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHARP phasing