X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5289PEG3350, (NH4)2SO4, Bis-Tris, sodium dithionite, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
1.9837.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.83α = 90
b = 74.52β = 111.4
c = 70.74γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHOsmic mirrors2007-05-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5711.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4890.40.05813.7681496-319.262
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.481.585.10.3255.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.526.6678501236090.770.1460.1450.178RANDOM11.261
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.7-1.34-0.96-0.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.042
r_dihedral_angle_4_deg18.969
r_dihedral_angle_3_deg12.103
r_dihedral_angle_1_deg5.826
r_sphericity_bonded5.342
r_scangle_it2.363
r_rigid_bond_restr2.241
r_angle_refined_deg1.951
r_scbond_it1.737
r_angle_other_deg0.925
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.042
r_dihedral_angle_4_deg18.969
r_dihedral_angle_3_deg12.103
r_dihedral_angle_1_deg5.826
r_sphericity_bonded5.342
r_scangle_it2.363
r_rigid_bond_restr2.241
r_angle_refined_deg1.951
r_scbond_it1.737
r_angle_other_deg0.925
r_mcangle_it0.813
r_mcbond_it0.706
r_symmetry_vdw_other0.252
r_nbd_refined0.211
r_nbd_other0.196
r_metal_ion_refined0.176
r_nbtor_refined0.171
r_symmetry_hbond_refined0.169
r_xyhbond_nbd_refined0.155
r_symmetry_vdw_refined0.15
r_mcbond_other0.143
r_chiral_restr0.098
r_nbtor_other0.088
r_xyhbond_nbd_other0.027
r_bond_refined_d0.017
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4748
Nucleic Acid Atoms
Solvent Atoms884
Heterogen Atoms22

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection