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Crystal structure of phenazine biosynthesis protein PhzA/B from Burkholderia cepacia R18194, complex with 2-(cyclohexylamino)benzoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 285 16-20% (w/v) PEG 3350, 0.2 M NH4-acetate, 0.1 M Bis-TRIS pH 6.1-6.7, soak with 10 mM 2-(cyclohexylamino)benzoic acid in ML, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.24 45.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.55 α = 90 b = 64.55 β = 90 c = 160.39 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Si(111)monochromator 2007-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9789 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 19.65 99.9 0.047 24.2 14.1 43508 43465 4 35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.8 100 0.313 4.2 10.6 6744
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 19.65 41272 2191 99.99 0.17169 0.1695 0.2457 0.21406 0.2857 RANDOM 28.096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.999 r_dihedral_angle_4_deg 17.916 r_dihedral_angle_3_deg 14.616 r_dihedral_angle_1_deg 6.237 r_scangle_it 5.389 r_scbond_it 3.786 r_mcangle_it 2.17 r_angle_refined_deg 2.08 r_mcbond_it 1.942 r_angle_other_deg 1.034
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.999 r_dihedral_angle_4_deg 17.916 r_dihedral_angle_3_deg 14.616 r_dihedral_angle_1_deg 6.237 r_scangle_it 5.389 r_scbond_it 3.786 r_mcangle_it 2.17 r_angle_refined_deg 2.08 r_mcbond_it 1.942 r_angle_other_deg 1.034 r_mcbond_other 0.49 r_symmetry_vdw_other 0.329 r_chiral_restr 0.259 r_nbd_refined 0.247 r_xyhbond_nbd_refined 0.237 r_nbd_other 0.228 r_symmetry_vdw_refined 0.223 r_nbtor_refined 0.195 r_symmetry_hbond_refined 0.182 r_nbtor_other 0.093 r_bond_refined_d 0.026 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2666 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction XSCALE data scaling SHELXD phasing