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Crystal structure of an S. thermophilus NFeoB T35S mutant without nucleotide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LX8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M HEPES, 2%(v/v) PEG 400, 2M (NH4)2SO4, pH 7.5, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.88 34.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.4 α = 90 b = 59.9 β = 90 c = 85.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2011-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95370 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 99.8 0.119 16.3 6.8 7047 7047
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.7 98.6 0.648 2.1 4.9 343
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3LX8 2.65 49 6959 6959 685 98.96 0.2258 0.2192 0.217 0.2841 0.2747 RANDOM 48.3688
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.68 0.78 1.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.137 r_dihedral_angle_3_deg 13.976 r_dihedral_angle_4_deg 11.621 r_dihedral_angle_1_deg 3.762 r_mcangle_it 2.502 r_scangle_it 2.034 r_mcbond_it 1.497 r_angle_refined_deg 1.389 r_scbond_it 1.356 r_chiral_restr 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.137 r_dihedral_angle_3_deg 13.976 r_dihedral_angle_4_deg 11.621 r_dihedral_angle_1_deg 3.762 r_mcangle_it 2.502 r_scangle_it 2.034 r_mcbond_it 1.497 r_angle_refined_deg 1.389 r_scbond_it 1.356 r_chiral_restr 0.06 r_bond_refined_d 0.01 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1907 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 5
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection HKL-2000 data reduction PHASER phasing