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Crystal structure of prephenate dehydrogenase from Streptococcus mutans
Crystallization Crystal Properties Matthews coefficient Solvent content 3.44 64.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.34 α = 90 b = 145.624 β = 90 c = 77.552 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 52.7 24626
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 36.53 24626 1314 97.47 0.19531 0.19324 0.2364 0.23401 0.2643 RANDOM 22.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.17 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.886 r_dihedral_angle_4_deg 22.722 r_dihedral_angle_3_deg 16.237 r_sphericity_free 12.054 r_dihedral_angle_1_deg 6.631 r_scangle_it 5.914 r_sphericity_bonded 5.158 r_scbond_it 4.209 r_rigid_bond_restr 2.652 r_mcangle_it 2.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.886 r_dihedral_angle_4_deg 22.722 r_dihedral_angle_3_deg 16.237 r_sphericity_free 12.054 r_dihedral_angle_1_deg 6.631 r_scangle_it 5.914 r_sphericity_bonded 5.158 r_scbond_it 4.209 r_rigid_bond_restr 2.652 r_mcangle_it 2.456 r_angle_refined_deg 2.012 r_mcbond_it 1.534 r_chiral_restr 0.127 r_bond_refined_d 0.025 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2238 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 44
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling