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Crystal structure of betaC-S lyase from Streptococcus anginosus: Internal aldimine form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.6M Ammonium sulfate, 0.1M Hepes pH7.5, 0.1M Sodium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.97 α = 90 b = 111.14 β = 90 c = 216.44 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2008-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 108.47 100 0.061 0.061 122200 122200
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.97 100 0.23 0.23 7249
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.93 108.47 115973 115973 6130 99.97 0.14923 0.14923 0.14718 0.1529 0.18772 0.1912 RANDOM 10.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 -0.15 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.406 r_dihedral_angle_4_deg 18.178 r_dihedral_angle_3_deg 12.148 r_dihedral_angle_1_deg 6.293 r_scangle_it 3.154 r_scbond_it 2.34 r_angle_refined_deg 1.466 r_mcbond_it 1.269 r_mcangle_it 1.175 r_angle_other_deg 0.958
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.406 r_dihedral_angle_4_deg 18.178 r_dihedral_angle_3_deg 12.148 r_dihedral_angle_1_deg 6.293 r_scangle_it 3.154 r_scbond_it 2.34 r_angle_refined_deg 1.466 r_mcbond_it 1.269 r_mcangle_it 1.175 r_angle_other_deg 0.958 r_symmetry_vdw_other 0.234 r_nbd_refined 0.206 r_mcbond_other 0.202 r_nbd_other 0.193 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.161 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.147 r_chiral_restr 0.092 r_nbtor_other 0.085 r_bond_refined_d 0.015 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12475 Nucleic Acid Atoms Solvent Atoms 1466 Heterogen Atoms 174
Software Software Software Name Purpose BSS data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling