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Rv0098 of Mycobacterium tuberculosis with ordered loop between beta-4 and beta-5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2PFC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 5%-12% PEG 6000, 0.1M HEPES buffer, 5% MPD , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.04 39.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.19 α = 90 b = 100.19 β = 90 c = 100.19 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Mirror 2006-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 50.1 100 0.091 23.3 16.1 4502 75.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 100 0.76 4 16.3 648
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2PFC 2.75 50.01 4276 205 100 0.22694 0.22421 0.2239 0.27679 0.2751 RANDOM 59.096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.87 r_dihedral_angle_3_deg 21.397 r_dihedral_angle_4_deg 20.901 r_dihedral_angle_1_deg 7.976 r_scangle_it 2.886 r_angle_refined_deg 1.712 r_scbond_it 1.665 r_mcangle_it 1.366 r_mcbond_it 0.731 r_chiral_restr 0.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.87 r_dihedral_angle_3_deg 21.397 r_dihedral_angle_4_deg 20.901 r_dihedral_angle_1_deg 7.976 r_scangle_it 2.886 r_angle_refined_deg 1.712 r_scbond_it 1.665 r_mcangle_it 1.366 r_mcbond_it 0.731 r_chiral_restr 0.127 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1316 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 14
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling