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Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Plasmodium falciparum in complex with NAS91
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z6B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 289 20-25% PEG 8000, 0.1M MES, 0.1-0.3M KH2PO4, 15-20% glycerol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.25 45.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 216.68 α = 90 b = 216.68 β = 90 c = 156.74 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 54.15 100 0.162 7.7 6.3 93862 58.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 100 0.576 3.1 6.2 13657
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Z6B 2.75 51.58 88993 4784 99.75 0.23611 0.23364 0.2317 0.28188 0.2642 RANDOM 40.458
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.72 8.72 -17.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.626 r_dihedral_angle_3_deg 17.303 r_dihedral_angle_4_deg 10.856 r_dihedral_angle_1_deg 6.168 r_scangle_it 1.519 r_angle_refined_deg 1.405 r_scbond_it 0.918 r_mcangle_it 0.846 r_mcbond_it 0.479 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.626 r_dihedral_angle_3_deg 17.303 r_dihedral_angle_4_deg 10.856 r_dihedral_angle_1_deg 6.168 r_scangle_it 1.519 r_angle_refined_deg 1.405 r_scbond_it 0.918 r_mcangle_it 0.846 r_mcbond_it 0.479 r_chiral_restr 0.09 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26735 Nucleic Acid Atoms Solvent Atoms 430 Heterogen Atoms 249
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling