☰ Navigation Tabs
Crystal structure of human PI3K-gamma in complex with CH5108134
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E8Y PDB ENTRY 1E8Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 20% PEG3350, 0.2M (NH4)2SO4, 0.1M Tris-HCl, streak seeding, pH 7.2, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 46.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.95 α = 90 b = 67.46 β = 95.68 c = 106.28 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315 mirrors 2006-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.548 60.953 99.7 0.046 0.046 17.7 3.7 33084 33084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.55 2.61 99.41 0.68 3.76 2419
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E8Y 2.55 60.95 33084 1675 100 0.2532 0.2498 0.2391 0.3162 0.2944 RANDOM 59.4382
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 1.2 2.6 -1.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.638 r_dihedral_angle_3_deg 16.247 r_dihedral_angle_4_deg 13.451 r_dihedral_angle_1_deg 6.21 r_scangle_it 6.181 r_scbond_it 4.191 r_mcangle_it 3.074 r_mcbond_it 1.74 r_angle_refined_deg 1.08 r_angle_other_deg 0.801
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.638 r_dihedral_angle_3_deg 16.247 r_dihedral_angle_4_deg 13.451 r_dihedral_angle_1_deg 6.21 r_scangle_it 6.181 r_scbond_it 4.191 r_mcangle_it 3.074 r_mcbond_it 1.74 r_angle_refined_deg 1.08 r_angle_other_deg 0.801 r_mcbond_other 0.355 r_chiral_restr 0.06 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6562 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 38
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction MOLREP phasing