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Crystal structure of human PI3K-gamma in complex with CH5132799
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E8Y PDB ENTRY 1E8Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 20% PEG3350, 0.2M (NH4)2SO4, 0.1M Tris-HCl, streak seeding, pH 7.2, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 46.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.91 α = 90 b = 67.55 β = 95.74 c = 106.49 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 mirrors 2006-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.544 51.92 99.7 0.037 0.037 23.4 3.8 33352 33352
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.54 2.61 99.69 0.56 3.72 2433
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E8Y 2.544 51.92 33352 1688 100 0.2387 0.236 0.229 0.2899 0.2837 RANDOM 60.9531
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 2.04 2.17 -1.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.551 r_dihedral_angle_4_deg 14.679 r_dihedral_angle_3_deg 14.586 r_dihedral_angle_1_deg 5.573 r_scangle_it 5.384 r_scbond_it 3.599 r_mcangle_it 2.724 r_mcbond_it 1.503 r_angle_refined_deg 1.016 r_angle_other_deg 0.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.551 r_dihedral_angle_4_deg 14.679 r_dihedral_angle_3_deg 14.586 r_dihedral_angle_1_deg 5.573 r_scangle_it 5.384 r_scbond_it 3.599 r_mcangle_it 2.724 r_mcbond_it 1.503 r_angle_refined_deg 1.016 r_angle_other_deg 0.793 r_mcbond_other 0.272 r_chiral_restr 0.056 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6594 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 36
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction MOLREP phasing