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Crystal structure of human tyrosylprotein sulfotransferase-2 complexed with PAP and C4 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293.4 0.1 M sodium malonate (pH 5.0), 10% polyethylene glycol 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293.4K
Crystal Properties Matthews coefficient Solvent content 2.69 54.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.263 α = 90 b = 138.263 β = 90 c = 227.994 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 100 0.108 0.108 12.5 5.5 65960 65960
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 50 100 0.108 0.108 12.5 5.5 65960
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.9 33.3 62512 62512 3337 99.79 0.19658 0.19522 0.22165 0.1895 RANDOM 20.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.633 r_dihedral_angle_4_deg 18.119 r_dihedral_angle_3_deg 16.228 r_dihedral_angle_1_deg 5.645 r_scangle_it 3.316 r_scbond_it 2.054 r_angle_refined_deg 1.455 r_mcangle_it 1.267 r_mcbond_it 0.688 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.633 r_dihedral_angle_4_deg 18.119 r_dihedral_angle_3_deg 16.228 r_dihedral_angle_1_deg 5.645 r_scangle_it 3.316 r_scbond_it 2.054 r_angle_refined_deg 1.455 r_mcangle_it 1.267 r_mcbond_it 0.688 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4854 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 60
Software Software Software Name Purpose ADSC data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling