3AOX

X-ray crystal structure of human anaplastic lymphoma kinase in complex with CH5424802


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1GAGPDB ENTRY 1GAG

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.5277PEG 550 MME, maleic acid, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0640.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.063α = 90
b = 58.1β = 90
c = 105.739γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90PIXELDECTRIS PILATUS 6M2010-07-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.755099.90.06817.0633074-331.997
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.861000.8490.9272.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1GAG1.7546.713307393499.930.17030.16920.2059RANDOM34.699
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.29-0.650.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.409
r_dihedral_angle_4_deg19.06
r_dihedral_angle_3_deg12.762
r_scangle_it6.638
r_dihedral_angle_1_deg5.275
r_scbond_it4.39
r_mcangle_it3.103
r_mcbond_it1.874
r_angle_refined_deg1.36
r_angle_other_deg0.874
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.409
r_dihedral_angle_4_deg19.06
r_dihedral_angle_3_deg12.762
r_scangle_it6.638
r_dihedral_angle_1_deg5.275
r_scbond_it4.39
r_mcangle_it3.103
r_mcbond_it1.874
r_angle_refined_deg1.36
r_angle_other_deg0.874
r_mcbond_other0.58
r_chiral_restr0.078
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2354
Nucleic Acid Atoms
Solvent Atoms236
Heterogen Atoms52

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing