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Structural insigths into dsRNA binding and RNA silencing suppression by NS3 protein of rice hoja blanca tenuivirus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 Sulfate, MPD, cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.17 43.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.69 α = 90 b = 79.69 β = 90 c = 122.087 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9792 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 100 0.109 7.5 25361 25361 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 100 0.429 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 34.21 25361 25361 1349 98.37 0.214 0.2144 0.21232 0.25474 0.2346 RANDOM 22.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 -0.56 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.321 r_dihedral_angle_4_deg 19.512 r_dihedral_angle_3_deg 14.024 r_scangle_it 4.466 r_dihedral_angle_1_deg 4.462 r_scbond_it 3.38 r_mcangle_it 1.675 r_angle_refined_deg 1.534 r_mcbond_it 1.342 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.321 r_dihedral_angle_4_deg 19.512 r_dihedral_angle_3_deg 14.024 r_scangle_it 4.466 r_dihedral_angle_1_deg 4.462 r_scbond_it 3.38 r_mcangle_it 1.675 r_angle_refined_deg 1.534 r_mcbond_it 1.342 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.214 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.1 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2998 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 40
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling