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Crystal structure of the HsaA monooxygenase from M. tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JBS PDB ENTRY 2JBS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 291 pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.16 61.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.14 α = 90 b = 175.77 β = 90 c = 179.49 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD monochromator SI111 2008-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 95 0.068 0.068 26.4 76266 72634 1 1 31.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2JBS 2 19.76 68987 68987 3631 100 0.2 0.20041 0.19835 0.1999 0.23939 0.2412 RANDOM 28.599
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.08 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.094 r_dihedral_angle_4_deg 22.172 r_dihedral_angle_3_deg 17.101 r_dihedral_angle_1_deg 5.927 r_scangle_it 4.685 r_scbond_it 2.999 r_angle_refined_deg 1.853 r_mcangle_it 1.788 r_mcbond_it 1.176 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.094 r_dihedral_angle_4_deg 22.172 r_dihedral_angle_3_deg 17.101 r_dihedral_angle_1_deg 5.927 r_scangle_it 4.685 r_scbond_it 2.999 r_angle_refined_deg 1.853 r_mcangle_it 1.788 r_mcbond_it 1.176 r_nbtor_refined 0.311 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.224 r_xyhbond_nbd_refined 0.216 r_symmetry_hbond_refined 0.184 r_chiral_restr 0.145 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5643 Nucleic Acid Atoms Solvent Atoms 622 Heterogen Atoms
Software Software Software Name Purpose CLS data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling