☰ Navigation Tabs
Crystal Structure of Ferredoxin NADP+ Oxidoreductase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 293 16 % PEG 6000, 0.1M ammonium sulfate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.514 α = 90 b = 127.971 β = 90 c = 128.353 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-06-21 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD ADSC QUANTUM 210 2007-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.9831 Photon Factory AR-NW12A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.97923 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.39 50 0.08 12 7.4 32978 31262
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 0.485 3.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.39 39.57 32978 31262 1668 99.49 0.24232 0.23981 0.2381 0.28891 0.2882 RANDOM 44.235
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 1.47 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.551 r_dihedral_angle_3_deg 16.801 r_dihedral_angle_4_deg 13.773 r_dihedral_angle_1_deg 5.213 r_scangle_it 1.559 r_angle_refined_deg 1.17 r_scbond_it 0.943 r_mcangle_it 0.885 r_mcbond_it 0.498 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.551 r_dihedral_angle_3_deg 16.801 r_dihedral_angle_4_deg 13.773 r_dihedral_angle_1_deg 5.213 r_scangle_it 1.559 r_angle_refined_deg 1.17 r_scbond_it 0.943 r_mcangle_it 0.885 r_mcbond_it 0.498 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.19 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5013 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 106
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling