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Crystal structure of C. jejuni pglb C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 18% PEG 8000, 0.2M CALCIUM ACETATE, 0.1M SODIUM CACODYLATE, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.49 50.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.258 α = 90 b = 115.258 β = 90 c = 88.883 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker DIP-6040 mirrors 2007-07-04 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD RIGAKU JUPITER 210 mirrors 2007-06-21 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 1.1 SPring-8 BL44XU 2 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 0.97881, 0.97909, 0.9400 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 30 99.9 0.085 9.3 3.8 16621 16601 68.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.9 100 0.503 3.37 3.8 1651
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 20 3 15293 15279 1276 99.91 0.24626 0.24511 0.2443 0.26006 0.2595 RANDOM 33.286
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.655 r_dihedral_angle_4_deg 17.154 r_dihedral_angle_3_deg 15.258 r_dihedral_angle_1_deg 5.623 r_scangle_it 0.701 r_mcangle_it 0.495 r_scbond_it 0.434 r_angle_refined_deg 0.335 r_mcbond_it 0.269 r_chiral_restr 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.655 r_dihedral_angle_4_deg 17.154 r_dihedral_angle_3_deg 15.258 r_dihedral_angle_1_deg 5.623 r_scangle_it 0.701 r_mcangle_it 0.495 r_scbond_it 0.434 r_angle_refined_deg 0.335 r_mcbond_it 0.269 r_chiral_restr 0.03 r_bond_refined_d 0.002 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4035 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling