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Crystal Structure of Actin capping protein in complex with V-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IZN PDB ENTRY 1IZN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.35 293 10% PEG 4000, 20% ISOPROPANOL, 20MM EDTA, 0.1M TRIS-HCL, pH 8.35, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.42 49.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.424 α = 90 b = 87.006 β = 90 c = 121.035 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD RIGAKU JUPITER 210 MIRRORS 2007-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.0 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 100 0.102 24.62 14.1 38745 37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 100 0.304 7.68 13.8 3818
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1IZN 2.2 19.96 36744 1941 99.99 0.18832 0.1857 0.1839 0.23696 0.2355 RANDOM 27.226
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.05 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.546 r_dihedral_angle_4_deg 15.767 r_dihedral_angle_3_deg 14.446 r_dihedral_angle_1_deg 5.49 r_scangle_it 4.591 r_scbond_it 2.773 r_mcangle_it 1.831 r_angle_refined_deg 1.419 r_mcbond_it 0.956 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.546 r_dihedral_angle_4_deg 15.767 r_dihedral_angle_3_deg 14.446 r_dihedral_angle_1_deg 5.49 r_scangle_it 4.591 r_scbond_it 2.773 r_mcangle_it 1.831 r_angle_refined_deg 1.419 r_mcbond_it 0.956 r_chiral_restr 0.105 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5034 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 8
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling