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Crystal structure of the C-terminal domain of cytochrome cz from Chlorobium tepidum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 293 1.4M ammonium sulfate, 2% PEG 400, 0.1M sodium citrate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.82 67.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.619 α = 90 b = 74.619 β = 90 c = 111.211 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2007-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 98.4 0.048 71.5 7.7 73534
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 94.8 0.198 4.4 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 37.32 69589 3660 98.4 0.13891 0.13809 0.1395 0.15454 0.1547 RANDOM 26.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.61 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.232 r_dihedral_angle_4_deg 21.551 r_dihedral_angle_3_deg 10.801 r_dihedral_angle_1_deg 4.878 r_scangle_it 4.203 r_scbond_it 2.88 r_mcangle_it 2.259 r_mcbond_it 1.361 r_angle_refined_deg 1.351 r_rigid_bond_restr 1.276
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.232 r_dihedral_angle_4_deg 21.551 r_dihedral_angle_3_deg 10.801 r_dihedral_angle_1_deg 4.878 r_scangle_it 4.203 r_scbond_it 2.88 r_mcangle_it 2.259 r_mcbond_it 1.361 r_angle_refined_deg 1.351 r_rigid_bond_restr 1.276 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1205 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 137
Software Software Software Name Purpose HKL-2000 data collection OASIS model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling OASIS phasing