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Crystal structure analysis of the fluorescent protein KillerRed
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.1 293 100mM MES pH6.1, 37.5% PEG 400, 5% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.54 72.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.464 α = 90 b = 123.464 β = 90 c = 110.171 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII 2009-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 2.29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 97.8 0.072 74.5 19.7 21805
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 2.95 96.5 0.35 13.9 19.5 2002
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.9 19.88 19621 1062 94.86 0.24737 0.24467 0.2443 0.29818 0.2917 RANDOM 46.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.03 0.06 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.143 r_dihedral_angle_4_deg 16.606 r_dihedral_angle_3_deg 16.074 r_dihedral_angle_1_deg 4.6 r_angle_refined_deg 0.913 r_scangle_it 0.863 r_mcangle_it 0.535 r_scbond_it 0.484 r_mcbond_it 0.291 r_chiral_restr 0.051
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.143 r_dihedral_angle_4_deg 16.606 r_dihedral_angle_3_deg 16.074 r_dihedral_angle_1_deg 4.6 r_angle_refined_deg 0.913 r_scangle_it 0.863 r_mcangle_it 0.535 r_scbond_it 0.484 r_mcbond_it 0.291 r_chiral_restr 0.051 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3518 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection SHELXDE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling