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Crystal structure of photo-activation state of Nitrile Hydratase mutant S113A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AHJ PDB ENTRY 2ahj
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP 2 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.324 α = 90 b = 60.104 β = 124.96 c = 81.885 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2009-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 50 99.1 0.037 18 56325
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2ahj 1.63 33.08 56325 53451 2848 99.12 0.16659 0.16524 0.19148 0.1846 RANDOM 17.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.716 r_dihedral_angle_4_deg 19.385 r_dihedral_angle_3_deg 10.943 r_dihedral_angle_1_deg 10.782 r_scangle_it 2.914 r_scbond_it 1.885 r_angle_refined_deg 1.194 r_mcangle_it 1.154 r_mcbond_it 0.744 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.716 r_dihedral_angle_4_deg 19.385 r_dihedral_angle_3_deg 10.943 r_dihedral_angle_1_deg 10.782 r_scangle_it 2.914 r_scbond_it 1.885 r_angle_refined_deg 1.194 r_mcangle_it 1.154 r_mcbond_it 0.744 r_nbtor_refined 0.309 r_nbd_refined 0.199 r_symmetry_hbond_refined 0.167 r_symmetry_vdw_refined 0.139 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_metal_ion_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3202 Nucleic Acid Atoms Solvent Atoms 635 Heterogen Atoms 1
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling