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Crystal structure of Exportin-5:RanGTP:pre-miRNA complex
Crystallization Crystal Properties Matthews coefficient Solvent content 2.55 51.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.157 α = 90 b = 304.667 β = 110.79 c = 89.23 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker DIP-6040 2008-12-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 74959
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.92 39.84 71062 3826 100 0.25061 0.24734 0.2464 0.31242 0.3116 RANDOM 96.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.16 -5.32 -6.54 -2.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.451 r_dihedral_angle_3_deg 18.336 r_dihedral_angle_4_deg 15.636 r_dihedral_angle_1_deg 6.175 r_scangle_it 3.521 r_scbond_it 2.339 r_angle_refined_deg 1.828 r_mcangle_it 1.732 r_mcbond_it 0.969 r_symmetry_hbond_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.451 r_dihedral_angle_3_deg 18.336 r_dihedral_angle_4_deg 15.636 r_dihedral_angle_1_deg 6.175 r_scangle_it 3.521 r_scbond_it 2.339 r_angle_refined_deg 1.828 r_mcangle_it 1.732 r_mcbond_it 0.969 r_symmetry_hbond_refined 0.318 r_symmetry_vdw_refined 0.313 r_nbtor_refined 0.311 r_nbd_refined 0.244 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.102 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20044 Nucleic Acid Atoms 1942 Solvent Atoms Heterogen Atoms 66
Software Software Software Name Purpose SHARP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling