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Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/acarbose complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.86 56.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.599 α = 90 b = 119.258 β = 90 c = 113.007 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 38.81 0.084 35055 35055 70.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 38.81 35055 3455 100 0.16402 0.15706 0.1626 0.23106 0.2318 RANDOM 25.796
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 -0.9 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.741 r_dihedral_angle_4_deg 21.544 r_dihedral_angle_3_deg 19.89 r_dihedral_angle_1_deg 7.139 r_scangle_it 5.111 r_scbond_it 3.304 r_angle_refined_deg 2.493 r_mcangle_it 2.198 r_mcbond_it 1.298 r_nbtor_refined 0.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.741 r_dihedral_angle_4_deg 21.544 r_dihedral_angle_3_deg 19.89 r_dihedral_angle_1_deg 7.139 r_scangle_it 5.111 r_scbond_it 3.304 r_angle_refined_deg 2.493 r_mcangle_it 2.198 r_mcbond_it 1.298 r_nbtor_refined 0.338 r_symmetry_hbond_refined 0.303 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.266 r_xyhbond_nbd_refined 0.198 r_chiral_restr 0.153 r_metal_ion_refined 0.146 r_bond_refined_d 0.029 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9550 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 112
Software Software Software Name Purpose ADSC data collection CNS refinement REFMAC refinement PROCESS data reduction SCALA data scaling CNS phasing