☰ Navigation Tabs
Crystal structure of Thermostable Direct Hemolysin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 10.6 293 Lithium sulfate, pH 10.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.066 α = 90 b = 63.066 β = 90 c = 83.045 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-14 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2007-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1 SPring-8 BL41XU 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.03950 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.5 50 97.5 0.046 25349
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 79.5 0.28
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.5 20 24046 1291 100 0.13411 0.13209 0.1306 0.17049 0.1678 RANDOM 15.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.68 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.049 r_dihedral_angle_4_deg 27.023 r_dihedral_angle_3_deg 11.956 r_sphericity_free 10.847 r_scangle_it 6.505 r_angle_other_deg 6.301 r_dihedral_angle_1_deg 5.809 r_sphericity_bonded 4.752 r_scbond_it 4.331 r_mcangle_it 3.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.049 r_dihedral_angle_4_deg 27.023 r_dihedral_angle_3_deg 11.956 r_sphericity_free 10.847 r_scangle_it 6.505 r_angle_other_deg 6.301 r_dihedral_angle_1_deg 5.809 r_sphericity_bonded 4.752 r_scbond_it 4.331 r_mcangle_it 3.254 r_mcbond_it 2.159 r_rigid_bond_restr 2.017 r_angle_refined_deg 1.773 r_mcbond_other 0.945 r_chiral_restr 0.125 r_bond_refined_d 0.02 r_gen_planes_other 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1230 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling