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CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3A1O PDB ENTRY 3A1O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.9 293 PEG 4000, PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.577 α = 90 b = 48.866 β = 97.36 c = 106.58 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 33.7 99.9 0.063 10.7 4.9 55824
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.84 1.92 99.3 0.254 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3A1O 1.84 33.7 55548 2822 99.9 0.156 0.154 0.1667 0.187 0.1981 RANDOM 17.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -0.92 0.98 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.574 r_dihedral_angle_4_deg 22.999 r_dihedral_angle_3_deg 13.322 r_dihedral_angle_1_deg 5.526 r_scangle_it 3.509 r_scbond_it 2.323 r_angle_refined_deg 1.495 r_mcangle_it 1.371 r_mcbond_it 1.217 r_angle_other_deg 0.845
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.574 r_dihedral_angle_4_deg 22.999 r_dihedral_angle_3_deg 13.322 r_dihedral_angle_1_deg 5.526 r_scangle_it 3.509 r_scbond_it 2.323 r_angle_refined_deg 1.495 r_mcangle_it 1.371 r_mcbond_it 1.217 r_angle_other_deg 0.845 r_symmetry_vdw_other 0.269 r_mcbond_other 0.228 r_nbd_refined 0.215 r_nbd_other 0.191 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.127 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.084 r_nbtor_other 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4659 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALA data scaling