☰ Navigation Tabs
The structure of the carboxyl-terminal domain of the human voltage-gated proton channel Hv1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 289 3.2M NaCl, 0.1M sodium citrate, pH 5.0, VAPOR DIFFUSION, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.81 32.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.65 α = 90 b = 37.65 β = 90 c = 137.04 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2009-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 37.65 100 0.081 12 6.2 12915 43.48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 100 0.323 4.5 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2 37.65 12236 630 99.98 0.25259 0.25191 0.2511 0.26621 0.2543 RANDOM 34.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.47 3.47 -6.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.997 r_dihedral_angle_3_deg 22.395 r_dihedral_angle_4_deg 18.676 r_dihedral_angle_1_deg 10.094 r_scangle_it 7.208 r_scbond_it 4.651 r_mcangle_it 2.729 r_angle_refined_deg 2.314 r_mcbond_it 1.633 r_chiral_restr 0.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.997 r_dihedral_angle_3_deg 22.395 r_dihedral_angle_4_deg 18.676 r_dihedral_angle_1_deg 10.094 r_scangle_it 7.208 r_scbond_it 4.651 r_mcangle_it 2.729 r_angle_refined_deg 2.314 r_mcbond_it 1.633 r_chiral_restr 0.145 r_bond_refined_d 0.03 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1396 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling SOLVE phasing