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A ZIPPER-LIKE DNA DUPLEX D(GCGAAAGCT)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other MANUALLY BUILT IN THE EXPERIMENTAL DENSITY
Crystallization Crystal Properties Matthews coefficient Solvent content 2.3 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.56 α = 90 b = 37.56 β = 90 c = 65.39 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 276 IMAGE PLATE MARRESEARCH DOUBLE MONO + MULTILAYER FOCUS 1996-09-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW21B LURE DW21B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 15 95 0.053 11.3 1832 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 61 0.148 4.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MAD AT BROMINE EDGE MANUALLY BUILT IN THE EXPERIMENTAL DENSITY 2.1 15 1832 183 95 0.189 0.189 0.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_angle_deg 2.3 x_angle_d 0.023 x_bond_d 0.012 x_bond_d_na x_bond_d_prot x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d
RMS Deviations Key Refinement Restraint Deviation x_angle_deg 2.3 x_angle_d 0.023 x_bond_d 0.012 x_bond_d_na x_bond_d_prot x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 184 Solvent Atoms 18 Heterogen Atoms 4
Software Software Software Name Purpose MADLSQ model building X-PLOR refinement MOSFLM data reduction CCP4 data scaling MADLSQ phasing CCP4 phasing