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Human Lysine Acetyltransferase KAT2B - Not Shipped
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NSQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 PEG 3350, PEG 8000, TRIS HCl
Crystal Properties Matthews coefficient Solvent content 2.66 53.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.202 α = 90 b = 87.711 β = 96.623 c = 60.726 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER2 X 4M 2025-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE VMXi 0.7748 Diamond VMXi
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 87.71 100 0.28 0.984 10.3 16.8 32019
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 8.97 0.367
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.87 60.394 31994 1527 99.997 0.168 0.1664 0.1694 0.2031 0.1629 31.979
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.871 0.091 0.658 0.188
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.843 r_dihedral_angle_6_deg 13.6 r_lrange_other 8.469 r_lrange_it 8.465 r_scangle_it 6.512 r_scangle_other 6.511 r_dihedral_angle_1_deg 6.42 r_dihedral_angle_2_deg 5.806 r_mcangle_it 4.557 r_mcangle_other 4.556
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.843 r_dihedral_angle_6_deg 13.6 r_lrange_other 8.469 r_lrange_it 8.465 r_scangle_it 6.512 r_scangle_other 6.511 r_dihedral_angle_1_deg 6.42 r_dihedral_angle_2_deg 5.806 r_mcangle_it 4.557 r_mcangle_other 4.556 r_scbond_it 4.147 r_scbond_other 4.146 r_mcbond_it 3.018 r_mcbond_other 3.015 r_angle_refined_deg 1.688 r_angle_other_deg 0.629 r_nbd_other 0.222 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.214 r_symmetry_nbd_refined 0.201 r_symmetry_nbd_other 0.2 r_nbtor_refined 0.196 r_symmetry_xyhbond_nbd_refined 0.124 r_chiral_restr 0.091 r_symmetry_nbtor_other 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2538 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2.multiplex data reduction Aimless data scaling MOLREP phasing Coot model building