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Crystal structure of 2-amino-[1,2,4]triazolo[1,5-a]pyridine derivative bound to KIT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other proprietary model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 HEPES; PEG8000
Crystal Properties Matthews coefficient Solvent content 2.36 47.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.934 α = 90 b = 81.168 β = 90 c = 99.767 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.328 62.962 95.6 0.1311 0.1413 0.0516 0.993 10.28 7.42 15538
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.328 2.368 100 1.5088 1.6193 0.5796 0.635 1.37 7.57
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.328 62.962 15431 1140 94.925 0.231 0.2264 0.2304 0.2953 0.2981 49.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.327 -2.941 -0.386
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.174 r_dihedral_angle_3_deg 13.922 r_dihedral_angle_4_deg 11.47 r_dihedral_angle_1_deg 6.739 r_lrange_it 5.681 r_lrange_other 5.667 r_mcangle_it 4.011 r_mcangle_other 4.01 r_scangle_it 3.446 r_scangle_other 3.445
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.174 r_dihedral_angle_3_deg 13.922 r_dihedral_angle_4_deg 11.47 r_dihedral_angle_1_deg 6.739 r_lrange_it 5.681 r_lrange_other 5.667 r_mcangle_it 4.011 r_mcangle_other 4.01 r_scangle_it 3.446 r_scangle_other 3.445 r_mcbond_other 2.371 r_mcbond_it 2.37 r_scbond_it 1.997 r_scbond_other 1.996 r_angle_refined_deg 1.346 r_angle_other_deg 1.094 r_symmetry_xyhbond_nbd_refined 0.18 r_nbd_refined 0.157 r_nbtor_refined 0.153 r_symmetry_nbd_other 0.145 r_xyhbond_nbd_refined 0.135 r_nbd_other 0.128 r_symmetry_nbd_refined 0.088 r_symmetry_nbtor_other 0.073 r_chiral_restr 0.05 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2521 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 27
Software Software Software Name Purpose autoPROC data processing Aimless data scaling TRUNCATE data processing REFMAC refinement XDS data reduction MOLREP phasing