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Crystal structure of human Histidine Triad Nucleotide-Binding Protein 1 in complex with morpholino adenosine 6'-O-phosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YQM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281 14% w/v PEG4000, 0.1 M MES pH 6.0
Crystal Properties Matthews coefficient Solvent content 1.9 35.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.346 α = 90 b = 46.069 β = 97.468 c = 68.192 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-6000HE 2026-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU PhotonJet-S 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.501 18.782 99.3 0.052 0.03 0.998 13.4 3.3 33104 8.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.501 1.53 97.7 0.34 0.344 0.722 2.1 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.501 18.782 33056 1574 99.294 0.156 0.1542 0.1674 0.2021 0.2134 11.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.422 0.181 -0.007 -0.446
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.934 r_dihedral_angle_3_deg 12.778 r_dihedral_angle_2_deg 10.714 r_dihedral_angle_1_deg 6.299 r_lrange_it 5.322 r_lrange_other 4.762 r_scangle_it 2.445 r_scangle_other 2.444 r_angle_refined_deg 1.855 r_mcangle_it 1.795
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.934 r_dihedral_angle_3_deg 12.778 r_dihedral_angle_2_deg 10.714 r_dihedral_angle_1_deg 6.299 r_lrange_it 5.322 r_lrange_other 4.762 r_scangle_it 2.445 r_scangle_other 2.444 r_angle_refined_deg 1.855 r_mcangle_it 1.795 r_mcangle_other 1.794 r_scbond_it 1.606 r_scbond_other 1.603 r_mcbond_it 1.184 r_mcbond_other 1.184 r_angle_other_deg 0.648 r_nbd_refined 0.274 r_symmetry_nbd_refined 0.255 r_xyhbond_nbd_refined 0.232 r_symmetry_xyhbond_nbd_refined 0.225 r_nbd_other 0.209 r_symmetry_nbd_other 0.202 r_nbtor_refined 0.171 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1784 Nucleic Acid Atoms Solvent Atoms 387 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling MOLREP phasing