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Cu(II) - alpha-synuclein monomer complex - local structure of binding site His50 with Gly47 as ligand
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 90 uM [U-13C; U-15N] Alpha-synuclein, 20 mM sodium phosphate, 0.02 % v/v sodium azide, 10 % v/v D2O 90% H2O/10% D2O 20 mM 7.4 1 bar 281 Bruker AVANCE 950 2 2D 1H-13C HSQC 90 uM [U-13C; U-15N] Alpha-synuclein, 20 mM sodium phosphate, 0.02 % v/v sodium azide, 10 % v/v D2O 90% H2O/10% D2O 20 mM 7.4 1 bar 281 Bruker AVANCE 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 950 2 Bruker AVANCE 700
NMR Refinement Method Details Software molecular dynamics Amber Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 5 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 20 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 structure calculation CYANA 3.98.15 Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment Poky Manthey, Tonelli, Clos II, Rahimi, Markley and Lee 4 peak picking Poky Manthey, Tonelli, Clos II, Rahimi, Markley and Lee 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 processing TopSpin Bruker Biospin 7 collection TopSpin Bruker Biospin