☰ Navigation Tabs
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 14.662 r_long_range_B_other 14.662 r_dihedral_angle_3_deg 13.699 r_mcangle_it 11.652 r_mcangle_other 11.651 r_scangle_other 10.908 r_dihedral_angle_1_deg 7.37 r_mcbond_it 7.192 r_mcbond_other 7.188 r_scbond_it 6.875
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 14.662 r_long_range_B_other 14.662 r_dihedral_angle_3_deg 13.699 r_mcangle_it 11.652 r_mcangle_other 11.651 r_scangle_other 10.908 r_dihedral_angle_1_deg 7.37 r_mcbond_it 7.192 r_mcbond_other 7.188 r_scbond_it 6.875 r_scbond_other 6.875 r_dihedral_angle_2_deg 2.21 r_angle_refined_deg 0.685 r_angle_other_deg 0.251 r_chiral_restr 0.031 r_gen_planes_refined 0.008 r_bond_refined_d 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample SKM-M.smegmatis 70S complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 68217 Reported Resolution (Å) 3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 43
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 1400 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.7.5 MODEL REFINEMENT REFMAC 5.8.0430 RECONSTRUCTION RELION 5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION