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EVAL processed HEWL, N-acetylglucosamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DDA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4.7 295 HEWL CO-CRYSTALLIZED WITH 150 MM
EXCESS N-ACETYLGLUCOSAMINE IN 1 ML 0.05 M SODIUM ACETATE AND 1
ML 10% SODIUM CHLORIDE, PH 4.7, BATCH, TEMPERATURE 295K
Crystal Properties Matthews coefficient Solvent content 1.96 37.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.392 α = 90 b = 78.392 β = 90 c = 36.578 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV OSMIC CONFOCAL MAX-FLUX, BLUE 2011-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE Cu FINE FOCUS 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.606 91.5 0.243 0.253 0.073 0.996 8.15 12.46 7468 23.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.071 91.5 1.96 2.04 0.569 0.508 1.14 12.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 19.606 7437 753 91.431 0.209 0.2038 0.207 0.2595 0.262 RANDOM 21.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.186 1.186 -2.371
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.998 r_dihedral_angle_3_deg 12.648 r_dihedral_angle_1_deg 6.594 r_lrange_it 5.28 r_lrange_other 5.265 r_scangle_it 2.837 r_scangle_other 2.835 r_mcangle_it 1.757 r_mcangle_other 1.754 r_scbond_it 1.644
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.998 r_dihedral_angle_3_deg 12.648 r_dihedral_angle_1_deg 6.594 r_lrange_it 5.28 r_lrange_other 5.265 r_scangle_it 2.837 r_scangle_other 2.835 r_mcangle_it 1.757 r_mcangle_other 1.754 r_scbond_it 1.644 r_scbond_other 1.643 r_mcbond_it 1.02 r_mcbond_other 1.02 r_angle_refined_deg 0.964 r_angle_other_deg 0.349 r_nbd_refined 0.197 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.167 r_nbd_other 0.135 r_xyhbond_nbd_refined 0.13 r_symmetry_nbd_refined 0.101 r_symmetry_xyhbond_nbd_refined 0.099 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.038 r_metal_ion_refined 0.017 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PDB-REDO refinement EVAL15 data scaling PHASER phasing