30IG | pdb_000030ig

EVAL processed HEWL, N-acetylglucosamine

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4DDA

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	4.7	295	HEWL CO-CRYSTALLIZED WITH 150 MM EXCESS N-ACETYLGLUCOSAMINE IN 1 ML 0.05 M SODIUM ACETATE AND 1 ML 10% SODIUM CHLORIDE, PH 4.7, BATCH, TEMPERATURE 295K

Crystal Properties
Matthews coefficient	Solvent content
1.96	37.25

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 78.392	α = 90
b = 78.392	β = 90
c = 36.578	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	RIGAKU RAXIS IV	OSMIC CONFOCAL MAX-FLUX, BLUE	2011-02-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	Cu FINE FOCUS	1.54184

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	19.606	91.5	0.243	0.253	0.073	0.996	8.15	12.46		7468			23.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.071	91.5		1.96	2.04	0.569	0.508	1.14	12.76

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2	19.606	7437	753	91.431	0.209	0.2038	0.207	0.2595	0.262	RANDOM	21.853

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.186			1.186		-2.371

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.998
r_dihedral_angle_3_deg	12.648
r_dihedral_angle_1_deg	6.594
r_lrange_it	5.28
r_lrange_other	5.265
r_scangle_it	2.837
r_scangle_other	2.835
r_mcangle_it	1.757
r_mcangle_other	1.754
r_scbond_it	1.644
r_scbond_other	1.643
r_mcbond_it	1.02
r_mcbond_other	1.02
r_angle_refined_deg	0.964
r_angle_other_deg	0.349
r_nbd_refined	0.197
r_symmetry_nbd_other	0.187
r_nbtor_refined	0.167
r_nbd_other	0.135
r_xyhbond_nbd_refined	0.13
r_symmetry_nbd_refined	0.101
r_symmetry_xyhbond_nbd_refined	0.099
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.038
r_metal_ion_refined	0.017
r_bond_refined_d	0.005
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	84
Heterogen Atoms	24

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB-REDO	refinement
EVAL15	data scaling
PHASER	phasing