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cryo-EM structure of AccA3-AccE5 complex in the presence of Arachidyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Refinement RMS Deviations Key Refinement Restraint Deviation s_dihedral_angle_6_deg 16.1498 s_dihedral_angle_3_deg 10.6328 s_dihedral_angle_1_deg 8.1638 s_dihedral_angle_2_deg 3.7515 s_angle_nonh_deg 1.713 s_nbtor 0.2204 s_nbd 0.208 s_chiral_restr 0.0814 s_hbond_nbd 0.0739 s_bond_nonh_d 0.0101
RMS Deviations Key Refinement Restraint Deviation s_dihedral_angle_6_deg 16.1498 s_dihedral_angle_3_deg 10.6328 s_dihedral_angle_1_deg 8.1638 s_dihedral_angle_2_deg 3.7515 s_angle_nonh_deg 1.713 s_nbtor 0.2204 s_nbd 0.208 s_chiral_restr 0.0814 s_hbond_nbd 0.0739 s_bond_nonh_d 0.0101 s_planes 0.0061
Sample Acyl-CoA carboxylase AccA3-AccE5 in complex with Arachdyl-CoA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 76111 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOCONTINUUM (6k x 4k) Electron Dose (electrons/Å**2) 44.4
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2250 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.4.1 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 4.4.1 MODEL FITTING UCSF ChimeraX 1.10.1 INITIAL EULER ASSIGNMENT cryoSPARC 4.4.1 FINAL EULER ASSIGNMENT cryoSPARC 4.4.1 CLASSIFICATION cryoSPARC 4.4.1 RECONSTRUCTION cryoSPARC MODEL REFINEMENT Servalcat
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1279569