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Crystal structure of Ca2 site mutant of Pro-S324A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2E1P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.1M MES, 12%(w/v) PEG20000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.7 54.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.729 α = 90 b = 118.314 β = 90 c = 120.633 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2007-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 50 96.4 0.089 17.4 82390
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.07 2.14 84.3 0.511 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2E1P 2.07 46.63 79342 3973 100 0.18414 0.18414 0.1846 0.2272 0.1908 RANDOM 36.849
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.205 r_dihedral_angle_4_deg 22.086 r_dihedral_angle_3_deg 20.815 r_dihedral_angle_1_deg 12.954 r_scangle_it 7.446 r_scbond_it 5.61 r_mcangle_it 3.518 r_mcbond_it 2.493 r_angle_refined_deg 2.086 r_symmetry_hbond_refined 0.353
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.205 r_dihedral_angle_4_deg 22.086 r_dihedral_angle_3_deg 20.815 r_dihedral_angle_1_deg 12.954 r_scangle_it 7.446 r_scbond_it 5.61 r_mcangle_it 3.518 r_mcbond_it 2.493 r_angle_refined_deg 2.086 r_symmetry_hbond_refined 0.353 r_nbtor_refined 0.327 r_symmetry_vdw_refined 0.264 r_nbd_refined 0.251 r_chiral_restr 0.222 r_xyhbond_nbd_refined 0.212 r_metal_ion_refined 0.181 r_bond_refined_d 0.022 r_gen_planes_refined 0.022 r_symmetry_metal_ion_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8635 Nucleic Acid Atoms Solvent Atoms 738 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing