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Crystal structure of human TTC5 (Strap) C-terminal OB domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.18M SODIUM IODIDE, 0.02M SODIUM ACETATE, 20% PEG3350, 10% ETHYLENE GLYCOL, 0.45% DMSO, 0.1M BIS-TRIS-PROPANE PH8.5
Crystal Properties Matthews coefficient Solvent content 2.05 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.26 α = 90 b = 62.39 β = 90 c = 78.77 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 33.3 98.6 0.1 8.7 3.5 14246 14.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 91 0.5 2.1 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 78.77 13521 723 98.34 0.1755 0.17242 0.1759 0.23638 0.2373 RANDOM 18.906
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 0.02 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.11 r_dihedral_angle_4_deg 21.447 r_sphericity_free 16.483 r_dihedral_angle_3_deg 12.901 r_scangle_it 8.361 r_scbond_it 7.007 r_dihedral_angle_1_deg 5.944 r_mcangle_it 4.438 r_mcbond_it 3.239 r_angle_other_deg 2.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.11 r_dihedral_angle_4_deg 21.447 r_sphericity_free 16.483 r_dihedral_angle_3_deg 12.901 r_scangle_it 8.361 r_scbond_it 7.007 r_dihedral_angle_1_deg 5.944 r_mcangle_it 4.438 r_mcbond_it 3.239 r_angle_other_deg 2.009 r_angle_refined_deg 1.524 r_mcbond_other 0.974 r_symmetry_hbond_refined 0.228 r_nbd_refined 0.211 r_symmetry_vdw_other 0.189 r_nbd_other 0.185 r_nbtor_refined 0.167 r_symmetry_vdw_refined 0.16 r_xyhbond_nbd_refined 0.154 r_nbtor_other 0.093 r_chiral_restr 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1237 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing