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Crystal structure of the RRM domain of mouse Deleted in azoospermia- like
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BS9 PDB ENTRY 3BS9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2.1 M LITHIUM SULPHATE, 50 MM HEPES PH 7.5, 5 % (V/V) GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.76 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.9 α = 90 b = 53.9 β = 90 c = 65.93 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 99.9 0.07 21.9 11.8 12616 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.6 4.7 12
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3BS9 1.7 22 12002 614 100 0.189 0.189 0.187 0.202 0.2009 RANDOM 25.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 0.58 1.16 -1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.893 r_dihedral_angle_3_deg 11.506 r_dihedral_angle_4_deg 11.031 r_dihedral_angle_1_deg 4.482 r_scangle_it 4.267 r_scbond_it 2.606 r_mcangle_it 1.709 r_angle_refined_deg 1.587 r_mcbond_it 0.961 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.893 r_dihedral_angle_3_deg 11.506 r_dihedral_angle_4_deg 11.031 r_dihedral_angle_1_deg 4.482 r_scangle_it 4.267 r_scbond_it 2.606 r_mcangle_it 1.709 r_angle_refined_deg 1.587 r_mcbond_it 0.961 r_nbtor_refined 0.316 r_symmetry_hbond_refined 0.228 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.174 r_symmetry_vdw_refined 0.16 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 631 Nucleic Acid Atoms Solvent Atoms 90 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing