X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WK0PDB ENTRY 2WK0

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.6753.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 154.898α = 90
b = 92.348β = 92.25
c = 143.829γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH SX-1652010-01-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.838.899.40.0812.73.5497842
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9599.50.432.63.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WK02.827.5347215252799.30.2190.2170.264RANDOM48.76
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.08-0.060.19-0.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.633
r_dihedral_angle_3_deg18.362
r_dihedral_angle_4_deg13.903
r_dihedral_angle_1_deg5.656
r_angle_refined_deg1.164
r_scangle_it0.898
r_scbond_it0.567
r_mcangle_it0.458
r_nbtor_refined0.302
r_mcbond_it0.259
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.633
r_dihedral_angle_3_deg18.362
r_dihedral_angle_4_deg13.903
r_dihedral_angle_1_deg5.656
r_angle_refined_deg1.164
r_scangle_it0.898
r_scbond_it0.567
r_mcangle_it0.458
r_nbtor_refined0.302
r_mcbond_it0.259
r_nbd_refined0.213
r_symmetry_vdw_refined0.209
r_metal_ion_refined0.186
r_xyhbond_nbd_refined0.158
r_chiral_restr0.074
r_symmetry_hbond_refined0.057
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13390
Nucleic Acid Atoms
Solvent Atoms166
Heterogen Atoms168

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing