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 2WYY | pdb_00002wyy

CRYOEM MODEL OF THE VESICULAR STOMATITIS VIRUS


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WYY 
Sample
VSV (INDIANA)
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentHOMEMADE PLUNGER
Cryogen NameETHANE
Sample Vitrification DetailsCRYOGEN - ETHANE, HUMIDITY - 50, TEMPERATURE - 80, INSTRUMENT - MANUAL PLUNGER, METHOD- MANUAL BLOT 1 SECOND BEFORE PLUNGING, DETAILS - VITRIFICATION ...CRYOGEN - ETHANE, HUMIDITY - 50, TEMPERATURE - 80, INSTRUMENT - MANUAL PLUNGER, METHOD- MANUAL BLOT 1 SECOND BEFORE PLUNGING, DETAILS - VITRIFICATION CARRIED OUT IN OPEN ROOM.
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles
Reported Resolution (Å)10.6
Resolution Method
Other DetailsSUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-1663.
Refinement Type
Symmetry TypeHELICAL
Map-Model Fitting and Refinement
Id1 (2WYY)
Refinement SpaceREAL
Refinement ProtocolRIGID BODY FIT
Refinement TargetCross-correlation coefficient
Overall B Value
Fitting Procedure
DetailsMETHOD--RIGID BODY REFINEMENT PROTOCOL--RIGID BODY REFINEMENT
Data Acquisition
Detector TypeGENERIC TVIPS
Electron Dose (electrons/Å**2)20
Imaging Experiment1
Date of Experiment2007-01-05
Temperature (Kelvin)80
Microscope ModelFEI POLARA 300
Minimum Defocus (nm)800
Maximum Defocus (nm)2500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification59000
Calibrated Magnification98000
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL FITTINGUCSF Chimera
RECONSTRUCTIONEMAN