☰ Navigation Tabs
MonoTIM mutant RMM0-1, dimeric form.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TRI PDB ENTRY 1TRI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 303 100 MM MES BUFFER PH 6.2, 180 MM LI2SO4, 26 PERCENT PEG 6000, 5 MM DITHIOTHREITOL, 1 MM EDTA AND 1 MM NAN3, AT 30 DEGREES CELSIUS.
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.882 α = 90 b = 94.082 β = 90 c = 108.885 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD VERTICAL FOCUSING MIRROR, SINGLE CRYSTAL (SI111) BENT MONOCHROMATOR (HORIZONTAL FOCUSING). 2006-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 47.14 98.2 0.06 9.1 4.3 53956 37.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 98.5 0.36 2 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1TRI 2.1 71.25 48510 5446 97.82 0.20813 0.20407 0.2013 0.24377 0.2402 RANDOM 35.087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.04 -0.88 1.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.829 r_dihedral_angle_4_deg 17.275 r_dihedral_angle_3_deg 14.649 r_dihedral_angle_1_deg 4.192 r_scangle_it 3.478 r_scbond_it 2.555 r_mcangle_it 1.775 r_angle_refined_deg 1.586 r_mcbond_it 1.277 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.829 r_dihedral_angle_4_deg 17.275 r_dihedral_angle_3_deg 14.649 r_dihedral_angle_1_deg 4.192 r_scangle_it 3.478 r_scbond_it 2.555 r_mcangle_it 1.775 r_angle_refined_deg 1.586 r_mcbond_it 1.277 r_nbtor_refined 0.313 r_nbd_refined 0.261 r_symmetry_vdw_refined 0.257 r_symmetry_hbond_refined 0.218 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.112 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7311 Nucleic Acid Atoms Solvent Atoms 1553 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CNS phasing