☰ Navigation Tabs
Crystal structure of Mycobacterium tuberculosis Rv0376c homologue from Mycobacterium smegmatis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 M CITRATE PH 4.8, 17% PEG 8000, 0.2 M AMMONIUM ACETATE AND 4% ETHANOL BY MICRO-SEEDING
Crystal Properties Matthews coefficient Solvent content 2.66 53.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.039 α = 90 b = 101.039 β = 90 c = 316.574 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 294 CCD ADSC CCD MIRRORS 2007-07-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 99.9 0.12 63.91 26.2 21926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 50 99.9 0.35 12.1 23.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.9 38.29 20666 1135 100 0.198 0.195 0.2066 0.252 0.2601 RANDOM 49.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.14 0.29 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.97 r_dihedral_angle_4_deg 20.641 r_dihedral_angle_3_deg 19.196 r_scangle_it 7.353 r_dihedral_angle_1_deg 5.804 r_scbond_it 4.799 r_mcangle_it 2.716 r_mcbond_it 1.703 r_angle_refined_deg 1.288 r_symmetry_hbond_refined 0.542
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.97 r_dihedral_angle_4_deg 20.641 r_dihedral_angle_3_deg 19.196 r_scangle_it 7.353 r_dihedral_angle_1_deg 5.804 r_scbond_it 4.799 r_mcangle_it 2.716 r_mcbond_it 1.703 r_angle_refined_deg 1.288 r_symmetry_hbond_refined 0.542 r_nbtor_refined 0.311 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.189 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5006 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction HKL-2000 data scaling SOLVE phasing RESOLVE phasing REFMAC refinement