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Structural analysis of homodimeric staphylococcal aureus EsxA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 0.1M MES PH 5.5, 80MM ZINC ACETATE, 8% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.2 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.232 α = 90 b = 27.636 β = 105.43 c = 64.394 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE OSMIC 2006-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 95.5 0.05 21.3 3.6 13006 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 70 0.14 2.5 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 31.04 11525 629 95.5 0.185 0.183 0.1822 0.223 0.2258 RANDOM 22.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.457 r_dihedral_angle_4_deg 21.038 r_dihedral_angle_3_deg 15.809 r_dihedral_angle_1_deg 5.18 r_scangle_it 4.428 r_scbond_it 2.713 r_mcangle_it 1.41 r_angle_refined_deg 1.38 r_mcbond_it 0.946 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.457 r_dihedral_angle_4_deg 21.038 r_dihedral_angle_3_deg 15.809 r_dihedral_angle_1_deg 5.18 r_scangle_it 4.428 r_scbond_it 2.713 r_mcangle_it 1.41 r_angle_refined_deg 1.38 r_mcbond_it 0.946 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1454 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing