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Structure of SUMO modified Ubc9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U9B PDB ENTRIES 1U9B, 2BF8 experimental model PDB 2BF8 PDB ENTRIES 1U9B, 2BF8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 24% (W/V) PEG3350, 200 MM SODIUM FORMATE, 100 MM BIS-TRIS PROPANE PH6.5
Crystal Properties Matthews coefficient Solvent content 2.08 40.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.52 α = 90 b = 66.61 β = 90 c = 122.579 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH HELIOS MIRRORS 2005-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 60 97.3 0.14 5.2 12.4 11764 1.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.32 81.5 0.43 1.8 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1U9B, 2BF8 2.22 61.31 11169 547 99.4 0.175 0.171 0.1707 0.256 0.2549 RANDOM 22.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.036 r_dihedral_angle_4_deg 15.404 r_dihedral_angle_3_deg 15.373 r_dihedral_angle_1_deg 6.439 r_scangle_it 3.118 r_scbond_it 1.986 r_angle_refined_deg 1.633 r_mcangle_it 1.092 r_angle_other_deg 0.961 r_mcbond_it 0.636
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.036 r_dihedral_angle_4_deg 15.404 r_dihedral_angle_3_deg 15.373 r_dihedral_angle_1_deg 6.439 r_scangle_it 3.118 r_scbond_it 1.986 r_angle_refined_deg 1.633 r_mcangle_it 1.092 r_angle_other_deg 0.961 r_mcbond_it 0.636 r_symmetry_vdw_other 0.274 r_nbd_refined 0.202 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.179 r_symmetry_hbond_refined 0.175 r_nbtor_refined 0.173 r_symmetry_vdw_refined 0.164 r_chiral_restr 0.089 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1904 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing