☰ Navigation Tabs
Structure of a DNA binding winged-helix protein, F-112, from Sulfolobus Spindle-shaped Virus 1.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 HANGING DROP VAPOR DIFFUSION IN 0.1M MES (PH 6.0). QIUCK SOAK IN ML CONTAINING 25% GLYCEROL AS A CRYOPROTECTANT.
Crystal Properties Matthews coefficient Solvent content 1.8 31.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.716 α = 90 b = 87.716 β = 90 c = 34.491 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRROR 2005-04-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.891940, 0.979180, 0.979320 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 99.9 0.07 20.6 7.7 4411 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 100 0.11 12.3 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.3 25.53 4133 235 99.9 0.175 0.173 0.1813 0.199 0.2036 RANDOM 23.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.633 r_dihedral_angle_4_deg 17.348 r_dihedral_angle_3_deg 12.02 r_dihedral_angle_1_deg 4.165 r_scangle_it 0.986 r_angle_refined_deg 0.923 r_angle_other_deg 0.682 r_scbond_it 0.667 r_symmetry_vdw_refined 0.625 r_mcangle_it 0.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.633 r_dihedral_angle_4_deg 17.348 r_dihedral_angle_3_deg 12.02 r_dihedral_angle_1_deg 4.165 r_scangle_it 0.986 r_angle_refined_deg 0.923 r_angle_other_deg 0.682 r_scbond_it 0.667 r_symmetry_vdw_refined 0.625 r_mcangle_it 0.387 r_mcbond_it 0.306 r_nbd_refined 0.178 r_nbtor_refined 0.166 r_nbd_other 0.148 r_symmetry_vdw_other 0.129 r_xyhbond_nbd_refined 0.121 r_symmetry_hbond_refined 0.115 r_nbtor_other 0.08 r_chiral_restr 0.052 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 582 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement