X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1P5HPDB ENTRY 1P5H

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.7554.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 214.155α = 90
b = 98.917β = 135.27
c = 152.527γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2007-09-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.856.08920.0612.42.71900532
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.968.70.412.32.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1P5H1.830180493953691.80.1820.1810.212RANDOM20.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.940.63-1.091.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.128
r_dihedral_angle_4_deg15.792
r_dihedral_angle_3_deg13.426
r_dihedral_angle_1_deg5.628
r_scangle_it1.887
r_scbond_it1.276
r_angle_refined_deg1.113
r_mcangle_it0.967
r_angle_other_deg0.885
r_mcbond_it0.878
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.128
r_dihedral_angle_4_deg15.792
r_dihedral_angle_3_deg13.426
r_dihedral_angle_1_deg5.628
r_scangle_it1.887
r_scbond_it1.276
r_angle_refined_deg1.113
r_mcangle_it0.967
r_angle_other_deg0.885
r_mcbond_it0.878
r_nbd_refined0.198
r_nbd_other0.187
r_nbtor_refined0.17
r_xyhbond_nbd_refined0.144
r_symmetry_vdw_other0.134
r_symmetry_hbond_refined0.131
r_symmetry_vdw_refined0.096
r_nbtor_other0.082
r_chiral_restr0.066
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13232
Nucleic Acid Atoms
Solvent Atoms1379
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing