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Formyl-CoA transferase mutant variant W48Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5H PDB ENTRY 1P5H
Crystallization Crystal Properties Matthews coefficient Solvent content 2.75 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 214.155 α = 90 b = 98.917 β = 135.27 c = 152.527 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 56.08 92 0.06 12.4 2.7 190053 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 68.7 0.41 2.3 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1P5H 1.8 30 180493 9536 91.8 0.182 0.181 0.1846 0.212 0.2138 RANDOM 20.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.94 0.63 -1.09 1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.128 r_dihedral_angle_4_deg 15.792 r_dihedral_angle_3_deg 13.426 r_dihedral_angle_1_deg 5.628 r_scangle_it 1.887 r_scbond_it 1.276 r_angle_refined_deg 1.113 r_mcangle_it 0.967 r_angle_other_deg 0.885 r_mcbond_it 0.878
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.128 r_dihedral_angle_4_deg 15.792 r_dihedral_angle_3_deg 13.426 r_dihedral_angle_1_deg 5.628 r_scangle_it 1.887 r_scbond_it 1.276 r_angle_refined_deg 1.113 r_mcangle_it 0.967 r_angle_other_deg 0.885 r_mcbond_it 0.878 r_nbd_refined 0.198 r_nbd_other 0.187 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.144 r_symmetry_vdw_other 0.134 r_symmetry_hbond_refined 0.131 r_symmetry_vdw_refined 0.096 r_nbtor_other 0.082 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13232 Nucleic Acid Atoms Solvent Atoms 1379 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing