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Retinoic acid bound cyanobacterial CYP120A1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other SUBSTRATE-FREE CYP120A1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.2 M SODIUM POTASSIUM TARTATE, 0.1 M MES PH6.5
Crystal Properties Matthews coefficient Solvent content 2.89 57.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.46 α = 90 b = 132.97 β = 114.5 c = 67.42 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 95 0.1 9.6 2.9 62855 3 32.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SUBSTRATE-FREE CYP120A1 2.1 19.85 61497 3238 95 0.225 0.223 0.2232 0.267 0.267 RANDOM 27.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.6 1.68 -1.69 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.797 r_dihedral_angle_4_deg 21.429 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_1_deg 6.409 r_scangle_it 2.193 r_scbond_it 1.397 r_angle_refined_deg 1.37 r_mcangle_it 1.029 r_mcbond_it 0.595 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.797 r_dihedral_angle_4_deg 21.429 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_1_deg 6.409 r_scangle_it 2.193 r_scbond_it 1.397 r_angle_refined_deg 1.37 r_mcangle_it 1.029 r_mcbond_it 0.595 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.208 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.15 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6891 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms 130
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing